HsaEX0073014 @ hg19
Exon Skipping
Gene
ENSG00000197961 | ZNF121
Description
zinc finger protein 121 [Source:HGNC Symbol;Acc:12904]
Coordinates
chr19:9679678-9695209:-
Coord C1 exon
chr19:9695137-9695209
Coord A exon
chr19:9694862-9695024
Coord C2 exon
chr19:9679678-9679758
Length
163 bp
Sequences
Splice sites
3' ss Seq
CGTTTCACTCTCTTCTCCAGGGG
3' ss Score
10.33
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
ATCTTTTCCGGCGCTGGCTCCGCATGGTCAGTGCCATTTCGCCTTTATCGTGGTGGAGTCCACCCTGGCTGTG
Seq A exon
GGGCTGTCGGTCCTCCTTGCGCGGCCAGTGGCTAGAGGCCGCAGGCTCAGTGGGTCCCAGTCAGGAGCCAGGTCGGGAAGTGTGTTTGTCCCGACTCCGCGCGTTTTCTGGAGTGGTTTCATCCGCTGTGCTCCCTTCTTCAAAAGCTTGGAAAGCAACCTTT
Seq C2 exon
GACCTATTCAAACTCAGTCTGTCTCTTGACTGGAGGAGGAGAAGGAAAAGTTGAGCACATTGCCAACCGGAGTTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197961_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTTCCGGCGCTGGC
R:
CTTGGGGAACTCCGGTTGG
Band lengths:
154-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)