HsaEX0073019 @ hg19
Exon Skipping
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]
Coordinates
chr5:43068072-43099440:+
Coord C1 exon
chr5:43068072-43068319
Coord A exon
chr5:43080002-43080056
Coord C2 exon
chr5:43099122-43099440
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTTGAGACAGAGT
3' ss Score
1.77
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAAACCTGAAACTGCCATTGAGCAGAAGGAAAACATCCCTTTCCAGAACCTTTCTCGTTTTTCTAAAAATCTGCACTTTTGGAAGTGATCCCCCAAAGAGACCTCCAGACTCTACCATGAGTGTCTCCAGCTGAACTCATCGTGTCTAATCCTCACCCTAGCTTATCCTGTTCAAATCATTTCCATCTTTTTCTGGATGAACCTGGGCGGATGTCAGACCAGAGAAGAGCACAGAATGTACCAGAGAG
Seq A exon
AGTCTTGCTCTGTCACCCAGGCTGAAGTGCACCCAGGCTGAAGTTGGAGGCTATG
Seq C2 exon
ATGCGGTGATGGGAGCCATATACACAAAGATGAAGGACTGGCTACAGCTTTCACAGACCTTACAACCTACTGAGAGAGCAAAGACACAGTGAAGAGATCATTCAGAATACAGTCCAACTCCAAGATCATTGGGAGAGCTTATTTGAAGACCAGAAAGGTTACTGAACATGGTGACTCTCTTCAAAGCCAGACCTTTGTCCTTGAATTTAGGGCTTCAAAAAACAATAGTAGGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-'2-8,'2-5,3-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTGAACTCATCGTGTC
R:
TATATGGCTCCCATCACCGCA
Band lengths:
145-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)