HsaEX0073039 @ hg38
Exon Skipping
Gene
ENSG00000196646 | ZNF136
Description
zinc finger protein 136 [Source:HGNC Symbol;Acc:HGNC:12920]
Coordinates
chr19:12163064-12185911:+
Coord C1 exon
chr19:12163064-12163206
Coord A exon
chr19:12169282-12169391
Coord C2 exon
chr19:12185785-12185911
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCCACATATTTGTTGTCAGAAA
3' ss Score
3.75
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTTCTCGCGTCTGCCGTACTTGGTTTCGCTTCGCTAGTCCCAGAGGCCCAGAGTGGCTCGCCTGGAGTCTCTGTGGCGCGGTTTCCTGTACCTGCCTTGGGATCCGGAGGGAGGAAGCTGGGACACCCGGGAGTCAGGAAATG
Seq A exon
AAAAAATGACATCACAGGTCAGAACCTTACATCGACTTGGTGAGTGGTTGCTGGTGAGAATTAAGACCCTGGAGGAGGGAGCATTTCCACACTGAGAAGGGGACAGTAGG
Seq C2 exon
GACTCGGTGGCTTTTGAGGATGTAGATGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTAGATCCTTCCCAGAAGAATCTCTACAGAGATGTGATGTGGGAAACCATGAGGAATCTGGCCTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196646_MULTIEX1-3/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTTCGCTTCGCTAGTCC
R:
GCCAGATTCCTCATGGTTTCCC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development