HsaEX0073040 @ hg19
Exon Skipping
Gene
ENSG00000196646 | ZNF136
Description
zinc finger protein 136 [Source:HGNC Symbol;Acc:12920]
Coordinates
chr19:12273879-12296989:+
Coord C1 exon
chr19:12273879-12274021
Coord A exon
chr19:12296600-12296726
Coord C2 exon
chr19:12296929-12296989
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATATGTGGGATGTTTCAGGAC
3' ss Score
6.6
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
TTTCTCGCGTCTGCCGTACTTGGTTTCGCTTCGCTAGTCCCAGAGGCCCAGAGTGGCTCGCCTGGAGTCTCTGTGGCGCGGTTTCCTGTACCTGCCTTGGGATCCGGAGGGAGGAAGCTGGGACACCCGGGAGTCAGGAAATG
Seq A exon
GACTCGGTGGCTTTTGAGGATGTAGATGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTAGATCCTTCCCAGAAGAATCTCTACAGAGATGTGATGTGGGAAACCATGAGGAATCTGGCCTCTATAG
Seq C2 exon
GGAAAAAATGGAAGGACCAGAACATTAAAGATCACTACAAACACCGAGGGAGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196646_MULTIEX1-4/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCGCGTCTGCCGTACTT
R:
TAGATTTCTCCCTCGGTGTTTGT
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)