HsaEX0073048 @ hg38
Exon Skipping
Gene
ENSG00000105708 | ZNF14
Description
zinc finger protein 14 [Source:HGNC Symbol;Acc:HGNC:12924]
Coordinates
chr19:19714361-19733097:-
Coord C1 exon
chr19:19732956-19733097
Coord A exon
chr19:19718374-19718448
Coord C2 exon
chr19:19714361-19714487
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTCTCCTTTTCAGTTT
3' ss Score
11.31
5' ss Seq
CCTGTAAGG
5' ss Score
4.84
Exon sequences
Seq C1 exon
ATTCCTGGCCCATGGGAAGATTGCGTTTCACCTGCTCCTGAAGGCCGAAGGTGGCTCTAGCGCATCCTTTGTCGCGCCGTGACCTGCAGGTACTGACAGATCCGTAGGGAGGACACCGTGACTTCCCGGACGCTGGGAAATG
Seq A exon
TTTGACGGGTTATACTGACAGTTCTTCAAGATCACTCATCATCTCTTCAGACATTTCCACTGTATTGATGAACCT
Seq C2 exon
GACTCAGTCTCCTTTGAGGATGTGGCCGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTTCACAGAAAAAGCTCTATGAAGATGTGATGCAGGAGACCTTCAAAAACCTGGTTTGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105708_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000344099fB8057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGGCCCATGGGAAGAT
R:
TTCACGGCCACATCCTCAAAG
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development