HsaEX0073052 @ hg19
Exon Skipping
Gene
ENSG00000196387 | ZNF140
Description
zinc finger protein 140 [Source:HGNC Symbol;Acc:12925]
Coordinates
chr12:133657037-133659815:+
Coord C1 exon
chr12:133657037-133657658
Coord A exon
chr12:133657859-133657915
Coord C2 exon
chr12:133659689-133659815
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTCTCTCTCTGCCAGGTC
3' ss Score
12.46
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGGCCGCGGTTATTTCTGGGAAATGTAGTTGCCTAGGACCCGGGTTCTTTGTTTCTCGGCTCTGGGCGTGGGAGGATAGCCCCTATGCTCTGGCGCACCGGGCCGCGATGGCTCTGGGAATTGTAGTTGTCGCAGGCCCTCGTTCTTTGTCTCCTGGCGTTCTGGGCACGGCAGCGAGGCGCTCTGGGAGTTCCAGTAGGAACGAAAAGCCCTTGCGCGCAGGGCCGCATTGGTTTCTGGGAATTGTAGTTTCTTGAGGCCGGCGGCCTGGTTGGGGTGACGTCGGCGAGGCTTCTGAAGACGCAATTCCTGCGACGCCCGCGGAGGGGCCCTGGGGGGCGGCGCCGAGCGTCTGGCCTGTGTTGGCTGTAGGCAACGAAAGGAGCCCTCCCGGTCTGCGCCGGATGGCCCCGGGCGGTGACTCGGTCCGGAGCCCTGGAACGCTACGCCCACCTGGCGGAAAGCACCACGGAAACGCATCCTTCTGTGGCCACTGTTAG
Seq A exon
GTCTGCCATTTTACACTTTTCTGATCTCCTCCTTCCCTTCTGTGAGCTATGTCTCAG
Seq C2 exon
GGGTCAGTGACATTCAGAGATGTGGCCATAGACTTCTCCCAGGAGGAGTGGAAATGGCTTCAGCCTGCTCAAAGAGATTTGTACAGATGTGTAATGTTGGAGAACTATGGCCATCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196387_MULTIEX1-2/7=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTTCTGTGGCCACTGTT
R:
ACCAGATGGCCATAGTTCTCCA
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)