HsaEX0073053 @ hg38
Exon Skipping
Gene
ENSG00000196387 | ZNF140
Description
zinc finger protein 140 [Source:HGNC Symbol;Acc:HGNC:12925]
Coordinates
chr12:133081273-133083229:+
Coord C1 exon
chr12:133081273-133081329
Coord A exon
chr12:133081532-133081613
Coord C2 exon
chr12:133083103-133083229
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGTGCAGCCGTGTTTTTCAGGAC
3' ss Score
5.61
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
GTCTGCCATTTTACACTTTTCTGATCTCCTCCTTCCCTTCTGTGAGCTATGTCTCAG
Seq A exon
GACTTGGGACGTGGCTTTCTTTCTCCTACAACCACCTGCCTGGCAGAACCCCAGGACCCTGTCCCTTGTTCCTCCTTTTCAG
Seq C2 exon
GGGTCAGTGACATTCAGAGATGTGGCCATAGACTTCTCCCAGGAGGAGTGGAAATGGCTTCAGCCTGCTCAAAGAGATTTGTACAGATGTGTAATGTTGGAGAACTATGGCCATCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196387_MULTIEX1-3/7=2-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTCTGATCTCCTCCTTCCCT
R:
CCAGTGAGACCAGATGGCCAT
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development