HsaEX0073080 @ hg19
Exon Skipping
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:12933]
Coordinates
chr3:125032152-125042288:-
Coord C1 exon
chr3:125042153-125042288
Coord A exon
chr3:125033781-125033897
Coord C2 exon
chr3:125032152-125032500
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTATTTTTGAGACAGGGT
3' ss Score
1.97
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GAATCGGATGGCATAAGTGATTAAGGTGGTATTGAGGATTTCTGAAGCCTATGAAAGGTAGAAACTCAACCATGATTTCTTTTTCAACTCTACAGCATTCCTTTCCTTGAAGTCTTCGTTTTTACCTTAGTCTCGG
Seq A exon
GGTCTTATTCTGTCACCTAGGTGGAGTGCAGTAGTACAGTCACAGCTCACTGCAGCCCCAACATCCTGGGCTCAAGCCATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACCACAG
Seq C2 exon
GCAGTTATACTTAAGCATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGACAATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCTACTGTGTCTGGAGAGCTACAGGATTCAGTACTTCAAGATCGAAGTATGCCTCACCAGGAGATCCTTGCTGCAGATGAAGTGTTACAAGAAAGTGAAATGAGACAACAGGATATGATATCACATGATGAACTCATGGTCCATGAGGAGACAGTGAAAAATGATGAAGAGCAGATGGAAACACATGAAAGACTTCCTCAAGGACTACAGTATGCACTTAATGTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848_MULTIEX1-4/9=3-5
Average complexity
C1
Mappability confidence:
88%=100=88%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.658
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(11.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGCATAAGTGATTAAGGTGGT
R:
AGTAGACTGGCCAGACACTCC
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)