HsaEX0073086 @ hg19
Exon Skipping
Gene
ENSG00000170631 | ZNF16
Description
zinc finger protein 16 [Source:HGNC Symbol;Acc:12947]
Coordinates
chr8:146171397-146176274:-
Coord C1 exon
chr8:146176183-146176274
Coord A exon
chr8:146173343-146173411
Coord C2 exon
chr8:146171397-146171601
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTCACATCCCCTTTGCAGATC
3' ss Score
11.09
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AATTCGGGGCGGGACTTCCGGGGGTCAGCCGGCGTTGGCTGAGACGTCTTCGTGCCACGGTGCTGCCTCCTTTCCAAGCGCGACCCGTTGAG
Seq A exon
ATCCCCTTGACCACACCCTCATTCTCAGCTGGTGCTCATGAAGGACAGAAGAGTCAATGTCAGTACAAT
Seq C2 exon
GTCCTTGTCATGCCCAGCCTCAGAACTCGCCGTGAGGAGGCAGAGATGGAGCTCTCAGTTCCAGGACCATCCCCCTGGACCCCTGCAGCCCAGGCCCGTGTGAGAGATGCTCCTGCTGTGACCCACCCTGGATCTGCAGCCTGTGGTACCCCCTGCTGTAGTGATACTGAGCTGGAAGCCATCTGCCCTCACTATCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170631_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.762
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGCTGAGACGTCTTCG
R:
TCACAGCAGGAGCATCTCTCA
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)