HsaEX0073093 @ hg19
Exon Skipping
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:12948]
Coordinates
chr19:53578310-53589574:-
Coord C1 exon
chr19:53589515-53589574
Coord A exon
chr19:53588416-53588471
Coord C2 exon
chr19:53578310-53578436
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGACATGTTTTCGTGTTAGGAA
3' ss Score
8.15
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
Exon sequences
Seq C1 exon
GAAGAAGTCTGGAAGAAGAGGAAGAGGAAAGAAAAGGAGTCAGGGATGGCCCTTACTCAG
Seq A exon
GAAACAGGAGCTCACTTTTCTACATCCTTGTTGGAGCATGCTGGGAATGAAGACAG
Seq C2 exon
GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949_MULTIEX1-4/4=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.947 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGGAGTCAGGGATGGCC
R:
TCTCCAACATCACGTCCCTGT
Band lengths:
133-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)