HsaEX0073108 @ hg38
Exon Skipping
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:HGNC:12966]
Coordinates
chr19:9364862-9376423:+
Coord C1 exon
chr19:9364862-9364948
Coord A exon
chr19:9371610-9371752
Coord C2 exon
chr19:9376316-9376423
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTTTCCTTTTATAGGTG
3' ss Score
12.41
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCTGGGTATAAGTAAGCAAGAAGAGGGCCTGGGAGAAGAGTCTGACGAGCAAGGGGAAGGTAGCCAAGGATGGAGTGAAATACAGG
Seq A exon
GTGACCTGTGTTTTTCCCCTGGCTGCTTTGGAAATTATGGGAAAAAATCAAATACCAAGGAAGAAAAATCTATAATGAAATTAGATGTGGATTTCTTTTTATGTATTCAGCTTGGGGGCTTATGATACTTCTAGTACCCAAAG
Seq C2 exon
AGATGCGGTCTTGCTGTGTTGCCTAGGCTGGTCTCAAACTCCTGCTCTCAAGTGATCCTCCTGCCTCAGCCTCCTGAGTACATTTATATTTAAAGTAATTATTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629-'2-2,'2-1,3-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGTATAAGTAAGCAAGA
R:
AAATATAAATGTACTCAGGAGGCTGA
Band lengths:
178-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development