HsaEX0073160 @ hg19
Exon Skipping
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:12986]
Coordinates
chr11:3392807-3400448:-
Coord C1 exon
chr11:3400268-3400448
Coord A exon
chr11:3394807-3394886
Coord C2 exon
chr11:3392807-3392933
Length
80 bp
Sequences
Splice sites
3' ss Seq
GGCATATTCTCACGATGCAGGTG
3' ss Score
5.61
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AATCAGGCACATGTCTGGAGAGGAGAGGACGGCTTCCGGGATCTAGCGGGGCCTTTGTCCCGACAGAGCTCCACTTCCTGTCCCCGCGGCTCTGTGTCCCCTGCTAGCCGTAGGTCGTGTGACCCGCAGGCACCGGGAGATCCAGAAGTGAAACGCCAGGCTCTCTGGAGGCCAGGAGATG
Seq A exon
GTGTGATTTGTCCAGAGAATCTTTCCTAAGAGGAAATCCCAGAGAAGCAGGAGAAAGAGAAAGAAATGGCTGGTGCTCAG
Seq C2 exon
ACTCTGTTGACGTTCAGGGATGTGGCCATAGAATTCTCCCTGGAGGAGTGGAAATGCCTGGACCTCGCTCAGCAGAATTTGTACAGGGATGTGATGTTGGAGAACTACAGAAACTTGTTCTCCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801_MULTIEX2-3/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCTCCACTTCCTGTCC
R:
CAGGCATTTCCACTCCTCCAG
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)