HsaEX0073182 @ hg19
Exon Skipping
Gene
ENSG00000170260 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:13004]
Coordinates
chr7:148936742-148947639:+
Coord C1 exon
chr7:148936742-148936893
Coord A exon
chr7:148946440-148946511
Coord C2 exon
chr7:148947250-148947639
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTATTGTGGGGAGCCA
3' ss Score
-4.66
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGAATGCACCTGGCATCAACACGGCGGCGGCGGCGGCGGCTTCCAACAGGCTCTGGGGCGCCGAGCGGACAGGAACGCAGCACGGGGGCTCCGAGGCGGGGTCTGGGTGTTGAGGGGCGACTGGAGCCATGGCGGAGTCGGCGCCTGCTCGG
Seq A exon
CCATTGAAAGTTTTCAAACGGGTGACATGATCAACTATGAAGTCTGGCAGGGATGTGGAAGCAAGATAAGAT
Seq C2 exon
CACAGGAGAAAACGACGCTCCACACCTTTAACTTCTTCCACACTTCCTTCACAAGCAACAGAGAAAAGCTCCTATTTTCAGACCACCGAGATTTCACTCTGGACGGTGGTGGCCGCTATTCAGGCTGTGGAGAAGAAGATGGAGTCCCAGGCTGCCCGGCTACAGAGCCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCTGACTGCGAGAAGATGGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTATGGGCTACTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170260-'0-1,'0-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.000 C2=0.266
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF124173=DUF3669=WD(100=61.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGCATCAACACGGC
R:
AAAGGTGTGGAGCGTCGTTTT
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)