HsaEX0073243 @ hg38
Exon Skipping
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr10:37837985-37856337:-
Coord C1 exon
chr10:37856296-37856337
Coord A exon
chr10:37853297-37853702
Coord C2 exon
chr10:37837985-37838111
Length
406 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTCTTTTTAGCAC
3' ss Score
11.12
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
CTCTCCTTCCTCCACTAAGAGCGGAAAATGAACAAATCCCAG
Seq A exon
CACTTTAAAAATACCATTCCGGTGGCCGGGCACCGTGGCTCCTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATTACCTGAGGTCGGGAGTTCGCGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAGTACAAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGAGTGAACCTGGGAGGAAGAGCTTGCAGTGAGCGGAGATTGCGCCACCACATTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGAAAAGAAAACAAAAAACCATTCCGATGACTTCTGGATTGTTGTTGTTTTTGTCTTAAATCATCCTCCCCCTTGAAGGCAATTGATCTTTTTTCCTCTG
Seq C2 exon
GAACAAGTGTCATTCAAGGATGTATGTGTGGACTTCACTCAGGAAGAGTGGTATCTGCTGGACCCTGCTCAGAAGATTCTATACAGAGATGTGATCCTGGAAAATTATAGCAATCTTGTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105_MULTIEX2-4/6=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000374648fB8083
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development