HsaEX0073246 @ hg19
Exon Skipping
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:13043]
Coordinates
chr10:38260636-38265561:-
Coord C1 exon
chr10:38265434-38265561
Coord A exon
chr10:38260843-38260949
Coord C2 exon
chr10:38260636-38260735
Length
107 bp
Sequences
Splice sites
3' ss Seq
GATTCTTTTGTGTTATTCAGAAA
3' ss Score
7.34
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATTGGCGTTTTTTTGGTCTTACGCCCTAGGGTGGGGAGAGGACTCCGGTGCCTCCGGGTCTGGGCTGGGCCGCAAAGGGCGGGGCCTGGGCCCGGCGCGGGCCGGGAGCAGAGGCCGAGACCCTGCAG
Seq A exon
AAAACAGAAACATAATTTTCAAAGCAACCAATAGGAAAGAAATGTGTAGATTCACTAAAAAATGTCCCAGGCTCATCAACATTAATATCAGAGTCAGAAGTGGACAG
Seq C2 exon
GTGATTCCTGGGGCTGCCAGCTAAGGTCCCTTATGATTTCTGCTCTGGCTTTGCAGTTTTCAGCCTTTCCCAAGAGCAGCAGAAAATGAACAAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGTCTTACGCCCTAGGG
R:
TGGAACTTGTTCATTTTCTGCTGC
Band lengths:
218-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)