HsaEX0073276 @ hg19
Exon Skipping
Gene
ENSG00000198393 | ZNF26
Description
zinc finger protein 26 [Source:HGNC Symbol;Acc:13053]
Coordinates
chr12:133583628-133589153:+
Coord C1 exon
chr12:133583628-133583754
Coord A exon
chr12:133584023-133584118
Coord C2 exon
chr12:133588791-133589153
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTGATTTCCCATCAACAGGGT
3' ss Score
8.34
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGATTATTGTCATTCAAGGATATATCTATGGAGTTCACCTGGGATGAATGGCAGCTACTGGATTCTACACAGAAGTACCTGTACAGAGATGTGATATTGGAAAACTATCATAACCTGATATCAGTGG
Seq A exon
GGTATCATGGTACCAAGCCTGACTTAATCTTCAAGTTGGAACAAGGAGAAGATCCATGGATAATAAATGCCAAAATTTCCAGGCAGAGCTGTCCAG
Seq C2 exon
TTCCATGCCTGTTGTCCATTGATTGACATGAGCACCCCTGTTTTCTCTGGAGAAATACCTCCCCTCTCTGGGGTGCTTCCTGTGGTAGTGTCTTTCAGGTATCCGTTCCACTAGCTACAGGTGAGCATTTTACCCATTGTTGGATAATGGTAATCTCTTTTTCAGAATTTTGAGTCTGTAATTCATTTGTACATGAACCAGAAAATGTGGGAACTCATTCATTCTTGTCCCAGAATTCTGTTGAGAACATCCATTCATTCTGGCTAATTGATTACAAGAATAACTGTGGATACGATCCCTTTAGAACCTGCTTCTCTGATCTGTGTGTTTCCTCACTTCTCAATAAAAATGTCTTTTGCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198393_MULTIEX1-5/6=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGAATGGCAGCTACTGG
R:
GACACTACCACAGGAAGCACC
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)