HsaEX0073285 @ hg19
Exon Skipping
Gene
ENSG00000083844 | ZNF264
Description
zinc finger protein 264 [Source:HGNC Symbol;Acc:13057]
Coordinates
chr19:57702869-57705369:+
Coord C1 exon
chr19:57702869-57702895
Coord A exon
chr19:57703067-57703314
Coord C2 exon
chr19:57705243-57705369
Length
248 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCCCCCGCCCTTCAGCCC
3' ss Score
9.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTTCTTCTGCACTTCTGTCTGGAGAG
Seq A exon
CCCCGCGGTCTCCAGGGGCGGCGCCCTGGGTCTGGAACGCGGTTGCCACCGAGGAGGCGGCGGCCCTGCGTCTGGAACGCCGTTGCCACCGAGGAGGCGGCGGCCCCGAGCGCGCCTGGAAGCCCCGGGCAACCGGCCAGGGTCGGGCACAGGTGGGGTCCGTCAGGCCGCCCGGGGCTCCTCTGTCCCAGCTCTGCGGCCCAGGGGGTGACGTGATGGCGGCAGCGGTGCTGACGGACCGGGCCCAG
Seq C2 exon
GTGTCTGTGACCTTTGATGATGTGGCTGTGACTTTCACCAAGGAGGAGTGGGGGCAGCTGGACCTAGCTCAGCGGACCCTGTACCAGGAGGTGATGCTGGAAAACTGTGGGCTCCTGGTGTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083844_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGCACTTCTGTCTGGAGA
R:
AGAGACACCAGGAGCCCAC
Band lengths:
149-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)