HsaEX0073297 @ hg19
Exon Skipping
Gene
ENSG00000185947 | ZNF267
Description
zinc finger protein 267 [Source:HGNC Symbol;Acc:13060]
Coordinates
chr16:31896482-31928622:+
Coord C1 exon
chr16:31896482-31896577
Coord A exon
chr16:31901528-31901571
Coord C2 exon
chr16:31925797-31928622
Length
44 bp
Sequences
Splice sites
3' ss Seq
CCATGCTTTGTTGTAAATAGGAC
3' ss Score
8.33
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCTTGTTGTCTCTAAGCCGGACCTGATCACCTTTTTGGAACAAAGGAAAGAGCCTTGGAATGTGAAGAGTGAGGAGACAGTAGCCATCCAGCCAG
Seq A exon
GACATTGAAGTTCCCTGTTATTGCATTTCGTTTTCTCACCACAG
Seq C2 exon
ATGTGTTTTCGCATTATAACAAGGACCTGTTGACAGAGCACTGCACAGAAGCTTCATTCCAAAAAGTGATATCGAGGAGACATGGGAGCTGTGATCTTGAGAATTTACATTTAAGAAAAAGGTGGAAAAGGGAGGAGTGTGAAGGGCACAATGGATGTTATGATGAAAAGACTTTTAAATATGATCAATTTGATGAATCCTCTGTTGAAAGTTTGTTTCACCAGCAAATACTTTCTTCTTGTGCCAAAAGCTATAACTTTGATCAATATAGGAAGGTCTTTACTCATTCATCATTGCTTAATCAACAAGAGGAAATAGATATTTGGGGAAAACATCACATATATGATAAAACTTCAGTGTTATTTAGGCAGGTCTCTACTCTAAATAGTTACCGAAATGTTTTTATTGGAGAGAAAAATTATCATTGCAATAATTCTGAAAAAACCTTGAACCAAAGCTCAAGCCCTAAAAATCATCAGGAAAATTATTTTCTAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185947_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=1.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF079757=C1_4=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTCTCTAAGCCGGACCT
R:
AGTGCTCTGTCAACAGGTCCT
Band lengths:
134-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)