HsaEX0073438 @ hg19
Exon Skipping
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:15624]
Coordinates
chr19:14810011-14815982:+
Coord C1 exon
chr19:14810011-14810093
Coord A exon
chr19:14812393-14812709
Coord C2 exon
chr19:14815866-14815982
Length
317 bp
Sequences
Splice sites
3' ss Seq
TCCATGTCTCTCTTGCTCAGCAG
3' ss Score
6.21
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CCTGGGAATCTCAACTTAAACCCGAAGAGTTGCCTTCTATGCAGGATCTTTTGGAAGAAGCATCCTCCAGGGACATGCAAATG
Seq A exon
CAGGTGGACCCCATGTGAAGAAAGGAGAGAGGGAGGGAGAATGAGCAACGAGGGCCCGGTGCCCTCTTTGTTTCTGTGGGCTCTCTCCTTTCAGTACAGGGCTCCAGTGCCCTCCACAGAACTCCACACCCAGCCCAGCAAGCCCCTCCATAATGGGTGCTGAGAGTGGCAGGCATGGGGCTCTTGTTACATCAGAGCCCCAGGAAACAGGCGGTCACAGACTATTCTGAGTGGGCAGAGGAGGTCCACCTATGGACACACGTTTAGAGAAGCTGAGGAGTTCATCCCTGAAGACATCCAGCCCGTGAGTAGTAGAG
Seq C2 exon
GGGCCGGGGCTGTTCCTGAGGATGCAGCTGGTGCCCTCCATAGAAGAGAGGGAGACACCATTGACTCGAGAGGACCGGCCAGCTCTCCAGGAGCCGCCTTGGTCTCTGGGATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.557 A=1.000 C2=0.468
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATCTCAACTTAAACCCGA
R:
CGTGCATCCCAGAGACCAAG
Band lengths:
198-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)