HsaEX0073442 @ hg19
Exon Skipping
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:15624]
Coordinates
chr19:14804263-14806473:+
Coord C1 exon
chr19:14804263-14804306
Coord A exon
chr19:14805822-14805945
Coord C2 exon
chr19:14806378-14806473
Length
124 bp
Sequences
Splice sites
3' ss Seq
GAATGTGTGTGCTGTTTTAGGAA
3' ss Score
9.31
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GGAGAACACCGACTGAGACCTCAAACCCTGGCTCCAGTGTCATG
Seq A exon
GAATCCGTCACCTTTGAGGATGTGGCCGTGGAGTTCATCCAGGAGTGGGCATTGCTGGACAGCGCACGGAGGAGCCTGTGCAAATACAGGATGCTTGACCAGTGCAGGACCCTGGCCTCCAGGG
Seq C2 exon
GAACTCCACCATGCAAACCCAGTTGTGTCTCCCAGCTGGGGCAAAGAGCAGAGCCAAAGGCAACAGAACGAGGGATTCTCCGTGCCACAGGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.2)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACACCGACTGAGACCT
R:
AACACCTGTGGCACGGAGAAT
Band lengths:
139-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)