HsaEX0073465 @ hg19
Exon Skipping
Gene
ENSG00000196693 | ZNF33B
Description
zinc finger protein 33B [Source:HGNC Symbol;Acc:13097]
Coordinates
chr10:43127743-43134001:-
Coord C1 exon
chr10:43133922-43134001
Coord A exon
chr10:43132368-43132420
Coord C2 exon
chr10:43127743-43127887
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTTTCCAACTCAGCTG
3' ss Score
7.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTTTGCGTGGGAGGCGGTCCCGGGATTTCAGGGGTCTACCGGCTCTCTTATGGCGAATGCAACCCGAAGAGAGAGTGAG
Seq A exon
CTGTATCTTCAGAGTTGTCTCCGTCTTTCCAAGAACAGAACAAAATGAACAAG
Seq C2 exon
GTAGATCAGAAGTTCCAGGGGTCAGTATCATTTAAAGATGTGACTGTGGGCTTCACCCAGGAGGAGTGGCAGCACCTGGACCCTAGTCAGAGGGCTCTGTATAGAGATGTGATGCTGGAGAACTACAGCAACCTTGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196693-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
67%=100=40%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=83.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGGCTCTCTTATGGCGAA
R:
CCTCTGACTAGGGTCCAGGTG
Band lengths:
136-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)