HsaEX0073468 @ hg19
Exon Skipping
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:13098]
Coordinates
chr8:146005617-146012725:-
Coord C1 exon
chr8:146012664-146012725
Coord A exon
chr8:146007212-146007258
Coord C2 exon
chr8:146005617-146005665
Length
47 bp
Sequences
Splice sites
3' ss Seq
TGAATACTTATTTATTTCAGGCT
3' ss Score
6.55
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
TTGGCGGGGAGGGAGGGCCGAACGGGCGAGGTTGGGCTGCCGTGCTGCTCGGCGGCGCTGAG
Seq A exon
GCTTTCCTGTTAAAATGAGTCTATTAAGGATGCACAATTTTCTTTAG
Seq C2 exon
GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378_MULTIEX1-1/6=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.103
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)