HsaEX0073469 @ hg38
Exon Skipping
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr8:144780228-144787325:-
Coord C1 exon
chr8:144787279-144787325
Coord A exon
chr8:144780875-144780963
Coord C2 exon
chr8:144780228-144780280
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTATTTTCGGTAGAGACA
3' ss Score
-4.34
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GGCCGAACGGGCGAGGTTGGGCTGCCGTGCTGCTCGGCGGCGCTGAG
Seq A exon
ACAGGGTTTCACCGTCAGCCAGGATGGTCTCGATCTCCTGACCTCGCCATCCACCCGCCTCAGCCACCCGAAGTGTTGGGATTTCAGGG
Seq C2 exon
GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378_MULTIEX1-3/7=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development