HsaEX0073486 @ hg19
Exon Skipping
Gene
ENSG00000251247 | ZNF345
Description
zinc finger protein 345 [Source:HGNC Symbol;Acc:16367]
Coordinates
chr19:37340525-37383887:+
Coord C1 exon
chr19:37340525-37341417
Coord A exon
chr19:37342732-37342806
Coord C2 exon
chr19:37383720-37383887
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTCTCCTTCCTCAGCCC
3' ss Score
9.02
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
TCGCGGATTTGTCCCCTTCCGACTCCCCATGCTGGTTCGGTCCCAGACGCTCAGGTGCCACATTGGGGTGCGCTCTCCCGGCTCCTCCACACGCTACGCAGCTGCCCGCCTCAAGAGCGTCTGCGTGCTTCCAGCGTTAAGTGGAATTCCAAGCAGCCTCCGGGGCACAGTTAGTCTGGTCACTGCGGCCAGACTGCCGCCTCAGGACCCAGAGAACGCAGCACACTTTAGTTGGGCCCATCTATCCCCGGCGAGGCTTGGACTACGTTTCCCAGGAGACCCTGCGGTCCAGTATGTCTCCCGAGGAGGGGCGGAAGCCCGGGAGCCGCCCTCTGAGGCTGGGCGGGGTGAAAGAAAGCTTGCCCCAGAGGACTTAAACAGGCAAGAAGGACTTGGTTAAAGACTATTGCAATAGTCAACTTCCAATACAACAGCAGCTGGAGATTTATAGCTAACGGGCTGGGTGAAGGAGTTAAAGGATGCTAAATTACTAAGAGGAA
Seq A exon
CCCTGCCCTGCTTGGATAGAGGCCTCCGAACAGGAGTAAAGAATGGCTGTTGAACATCCACAAGGCACCTGCAAG
Seq C2 exon
ATCCCCCACAGGCGCTGCCTGAGACCCAGCTCTGTGTCTCCTCGTCGTACAGCTTGTGGAGCTCCGACTGCAAGGCCATCAGCATGCCCAGGCAGGGGTTAAGCTGGAGGGCCATGGAGGAGGACAGGCCAGCAGGATGCCGCTTCTGCTCCAGGGCATGCACCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251247_MULTIEX1-1/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCCCCAGAGGACTTAA
R:
ACACAGAGCTGGGTCTCAGG
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)