HsaEX0073499 @ hg19
Exon Skipping
Gene
ENSG00000197937 | ZNF347
Description
zinc finger protein 347 [Source:HGNC Symbol;Acc:16447]
Coordinates
chr19:53656986-53662306:-
Coord C1 exon
chr19:53662262-53662306
Coord A exon
chr19:53661933-53662122
Coord C2 exon
chr19:53656986-53657046
Length
190 bp
Sequences
Splice sites
3' ss Seq
GATTTACTCTTGTTGTCCAGGCT
3' ss Score
5.09
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGTTCCGGAAGCGGATCGTGTTGGGTGCGGGTGACGCCGCCGAGC
Seq A exon
GCTGGAGTGCAATGGCGCGATTTCGGCTCACCGCATCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGCCCAGGCTGATCTCGAACTCCTGACCTCAG
Seq C2 exon
GAAGAACCCTTGAAGAAGAGGAAGAGGAAAGAAAGACAAGTCAGGCATGGCTCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197937-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCGGAAGCGGATCGT
R:
CTGGGTGAGAGCCATGCCT
Band lengths:
106-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)