HsaEX0073578 @ hg38
Exon Skipping
Gene
ENSG00000124613 | ZNF391
Description
zinc finger protein 391 [Source:HGNC Symbol;Acc:HGNC:18779]
Coordinates
chr6:27374615-27399550:+
Coord C1 exon
chr6:27374615-27375137
Coord A exon
chr6:27395017-27395095
Coord C2 exon
chr6:27399442-27399550
Length
79 bp
Sequences
Splice sites
3' ss Seq
AAATAAATTGTGATTTACAGGTT
3' ss Score
6.21
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AGAGTCCCTGGTCCCAGCCAGCGGGAGCGGCTTCTCCAGTTTGTGGCTCTCGGAGAGTTCGCCTCGTCCCTCCCTCTCAGATAACCACCTATTTCTGACCTCTGGAGGCCGGGCTGAGCCCGGAATTTTATGACCAGCGCCCGCTGGCCGTCGTCACCCTCTAATTTCTCGCAAAACTCCCGGGGACCCTTCTTAATGTCAGTAGCCACAGTCGCCGCCGCTCCTGCGCCTAGAAGCCTTCCACGACCCTCAACCCCACAGAGCCCCGAGCAGGCTCGGGTTCCCGCAGGATACACTGCCCGCCCAGTGGCCTGGAGGGCGCGTCCCGGGCTCCCCTACGCCTTTTGGAATCAGCGACAGACGCAGGTATAAAAGAGAGCCTCCACTCCCACCTCTCCAGGGCTCCCCACCCGCTCCTTCTGGCCGCTTTCTCCTGAAAGAGCAAGGCACCCCTAGAAGCTTCAGGCTCCTCCACAGGCGAGTGCCTACCCACCTATCAG
Seq A exon
GTTCATAGGTGGAAGAAATTCATCTCCAGATGAGACTTTGGACTTGGACTTGGGACTTTTGAGTTAATGCCAGAATGAT
Seq C2 exon
GAACCCCAGCATGTTAATTGAACTTGATCACCCAGTTGAAGGAAGAATAATAGTAGATGTTGGATCTTCAGGAAGCTGAAGAGGGCAGTGCCCAGAAATACCTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124613_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCAAGGCACCCCTAGAA
R:
ACAGGTATTTCTGGGCACTGC
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development