HsaEX0073596 @ hg38
Exon Skipping
Gene
ENSG00000147124 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:HGNC:13107]
Coordinates
chrX:47456272-47482585:-
Coord C1 exon
chrX:47482459-47482585
Coord A exon
chrX:47467410-47467760
Coord C2 exon
chrX:47456272-47456398
Length
351 bp
Sequences
Splice sites
3' ss Seq
CGAACTTTTCTCTTCCGCAGCAT
3' ss Score
9.36
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTAAGGGCACCCACCAGGTGTAATTGTGGGCGAGCGGCCGCTTCGGAGCTGACACTAAGCATGTGCAGATCAAGTCCAGAAGCGCCGGGGTTCCTCGAAGCAGTTTTCAGGACTTAAGGCTCTGGGA
Seq A exon
CATCCAGCACAGTGAGCGGCCCCTGGGCACCACCAGAAAACATTTGTGAGTGAACGTGGAGTGATGACCATGTGGACACTGTCTTTCCAGGGTTTCTTGGAGCCTCTGCAGAGTCTGGGGGCCAGGCTTCTTAGTGGAAACTGCAGGATCTTCCTTCTGACCCCTGCTTGCCTCGCCCCAGCAGCTCCGGTTGAGTCCACAGATGCCAGCTCAGCTTCCAGCTTGGGGAAGAGTGGGGTTGTCAGCAGGAGAGCCTGAGGGCTGAGGCCCAGCGTGAACATGGCAGCTAATGGGGACTCTCCCCCATGGTCCCCGGCCCTGGCTGCAGAGGGACGTGGCAGCTCATGTGAG
Seq C2 exon
GCTTCAGTGTCATTTGAGGACGTGACTGTGGACTTCAGCAAGGAGGAGTGGCAGCACTTGGACCCTGCCCAGAGACGCCTGTACTGGGATGTGACACTAGAGAACTACAGCCACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147124-'1-7,'1-2,4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.673 C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCAGGTGTAATTGTGGG
R:
CCACTGAGAGCAGGTGGC
Band lengths:
245-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development