HsaEX0073708 @ hg19
Exon Skipping
Gene
ENSG00000185219 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:21018]
Coordinates
chr3:44496613-44519162:-
Coord C1 exon
chr3:44519083-44519162
Coord A exon
chr3:44499736-44499856
Coord C2 exon
chr3:44496613-44497188
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCTATGTTCTTTTTTTTGAGGTG
3' ss Score
4.72
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GGAGCCGCCGGGAGGTAGGCGCGGGACGGGCGGCTGCGGTGGCGGCGGGTGGACCGATTGTCGCTCGGCGGCGGGAGTCG
Seq A exon
GTGGAGTCTCGCTCTTTCGCAAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAGCCTCCGCCTCCTGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG
Seq C2 exon
AAATGCTGGTAATTTCAGTCACTTGCTGATGACTTCTGATGTCCCAGCAAATGTTGGCATTGTTGACTGCTGAGAAGATACTTCTGAGGACCCACGTCTAAGGTGGACTTGGTTCGCACTCTTCTGGTTAGTCCCTGAACAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCTATCCAGCTCAGGCCCAGTCTTCGAGGGAGCGAGGGCGGCTTCAGACAGTAAAGAAGGAAGAAGAGGATGAAAGCTATACTCCAGTGCAGGCTGCCAGGCCACAGACTCTCAACCGCCCTGGCCAGGAGCTGTTCCGCCAGCTCTTCAGACAGCTTCGCTACCATGAGTCTTCAGGGCCCCTAGAAACTCTGAGCCGGCTCCGGGAACTCTGTCGCTGGTGGCTGAGGCCTGACGTTCTCTCCAAGGCACAGATCCTAGAGCTGCTGGTGCTGGAACAGTTCCTGAGCATCCTGCCTGGGGAGCTCCGGGTTTGGGTGCAGCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185219-'0-4,'0-0,2-4
Average complexity
S
Mappability confidence:
88%=100=83%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.315
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=65.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCGATTGTCGCTCG
R:
TTACTGTCTGAAGCCGCCCTC
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)