HsaEX0073739 @ hg19
Exon Skipping
Gene
ENSG00000197808 | ZNF461
Description
zinc finger protein 461 [Source:HGNC Symbol;Acc:21629]
Coordinates
chr19:37128283-37147445:-
Coord C1 exon
chr19:37147350-37147445
Coord A exon
chr19:37134696-37134764
Coord C2 exon
chr19:37128283-37130945
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTGTTTCCATGTAGGTA
3' ss Score
10.38
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GACTTTCTGTTTCTAAGCCAGCCGTAATCTCCTCATTGGAGCAAGGGAAGGAGCCCTGGATGGTTGTGAGGGAAGAGACAGGAAGATGGTGCCCAG
Seq A exon
GTACATGGAAAACTTGGGGATTTCACAATAATTTCTTGGACAATAATGAGGCTACAGACATAAATGCAG
Seq C2 exon
ACTTGGCATCCAGAGATGAGCCCCAGAAGTTATCTCCAAAAAGGGATATTTATGAAACAGAATTATCCCAGTGGGTTAACATGGAAGAATTTAAAAGCCATAGTCCTGAGAGATCAATTTTCAGCGCTATCTGGGAAGGCAACTGTCATTTTGAGCAACATCAGGGACAAGAGGAGGGTTATTTTAGACAACTTATGATTAACCATGAAAACATGCCCATTTTTAGCCAACATACTTTACTCACTCAAGAATTTTATGATAGAGAGAAAATCTCTGAATGTAAAAAGTGTAGAAAAATCTTCAGTTACCATTTATTTTTTAGTCACCACAAAAGAACTCATTCTAAAGAACTTTCTGAATGTAAAGAATGCACAGAAATTGTTAATACACCATGCCTTTTTAAACAACAGACAATTCAAAATGGTGACAAATGCAATGAGTGTAAAGAATGTTGGAAGGCCTTTGTTCATTGCTCACAACTTAAACATCTAAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197808_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.069
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(6.5=22.2)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF097235=Zn-ribbon_8=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACAGGAAGATGGTGCCC
R:
CAGTTGCCTTCCCAGATAGCG
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)