HsaEX0073774 @ hg19
Exon Skipping
Gene
ENSG00000127081 | ZNF484
Description
zinc finger protein 484 [Source:HGNC Symbol;Acc:23385]
Coordinates
chr9:95618474-95637341:-
Coord C1 exon
chr9:95637297-95637341
Coord A exon
chr9:95624422-95624447
Coord C2 exon
chr9:95618474-95618600
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTTTTTTTTTCAGACT
3' ss Score
10.93
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTTCTGCCCCTTTGTCCGAAGAGCCAAAAATGACCAAGTCCCTG
Seq A exon
ACTTCTTTCTCAACTACCAATGGCAG
Seq C2 exon
GAATCAGTGTCATTCAAGGACGTAACTGTAGACTTCAGTAGGGATGAGTGGCAACAATTAGACCTTGCTCAGAAAAGCCTGTACAGAGAAGTGATGCTGGAAAACTATTTCAACTTGATCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127081_MULTIEX1-4/8=1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=1.000 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTGTCCGAAGAGCCAAA
R:
ACAGGCTTTTCTGAGCAAGGT
Band lengths:
119-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)