HsaEX0073810 @ hg19
Exon Skipping
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:23783]
Coordinates
chr19:32851410-32873507:+
Coord C1 exon
chr19:32851410-32851524
Coord A exon
chr19:32871515-32871526
Coord C2 exon
chr19:32873373-32873507
Length
12 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTTATTGGTGTAGGAA
3' ss Score
9.28
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGAATAAGTCTTCAGTCCAGAAACAATATAGATGTGATGTGTGTGATTATACAAGTACAACATATGTTGGTGTCAGAAACCACAGGCGAATCCATAACTCTGATAAGCCGTACAG
Seq A exon
GAAAGAGTTCAG
Seq C2 exon
ATGCTCTCTGTGTGGGTATGTGTGTAGCCATCCTCCTTCTTTGAAGTCTCATATGTGGAAACATGCAAGTGACCAAAATTACAACTACGAACAAGTAAACAAGGCTATTAACGACGCGATTTCACAAAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(57.7=38.5)
A:
NO
C2:
PF134651=zf-H2C2_2=PD(38.5=21.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGTCAGAAACCACAGGC
R:
ACTTCAAAGAAGGAGGATGGCT
Band lengths:
96-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)