HsaEX0073849 @ hg19
Exon Skipping
Gene
ENSG00000175322 | ZNF519
Description
zinc finger protein 519 [Source:HGNC Symbol;Acc:30574]
Coordinates
chr18:14078199-14085075:-
Coord C1 exon
chr18:14084876-14085075
Coord A exon
chr18:14080188-14080265
Coord C2 exon
chr18:14078199-14078297
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCGTTTTACATTCCCACCAGCAT
3' ss Score
6.75
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TGGAAAAGCGAGATTGTCTTTGACCATTTGCTATGGACATTGTCAGGGATGGTGCAGCCTGAATGAGAATGTCTGCGGTATTTCCCGAAATAAGTATCCCTCAAGGATGATACTGTGGACCTCACTCAGGAAGAATGTGTCCTTCAGGGAAAGCTGCACAGAGACGTGATGCTGGAGAAGCAGTCATCTGGTTACTTTAG
Seq A exon
CATGAATGAGAGATCCTTTCGCTTCACGTCTTTGCCAGCATTTGGTGTTGTCAGTGTTCTAGATTTTGGCCATTATAG
Seq C2 exon
TACATGACTTCAGGCTCCTATGTGCAGAAGTCCTCAACCCCCAGGCTGCAGACCAGTACCTGTCCATGGCCTGTTAGGAAACTGGCCGCACAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175322_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGTGCAGCCTGAATGAG
R:
TCTGCACATAGGAGCCTGAAGT
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)