HsaEX0073862 @ hg38
Exon Skipping
Gene
ENSG00000189164 | ZNF527
Description
zinc finger protein 527 [Source:HGNC Symbol;Acc:HGNC:29385]
Coordinates
chr19:37380277-37390291:+
Coord C1 exon
chr19:37380277-37380372
Coord A exon
chr19:37384868-37384981
Coord C2 exon
chr19:37388306-37390291
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTTTGAGACAGGTT
3' ss Score
5
5' ss Seq
CTGGTTAAT
5' ss Score
0.5
Exon sequences
Seq C1 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTACTGGAGCAAGGGAAGGAACCGTGGATGGTGGAGAGAAAGATGTCACAGGGTCACTGTGCAG
Seq A exon
GTTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAGCCTATACCTACGGAACTCAAGCAATCTTCTCACCTCAGCATGCACACCACTGCACCTG
Seq C2 exon
ACTGGGAGTCTTGGTGTGAAATTGAGGAATTATCTCCAAAATGGTTCATTGATGAAGATGAAATATCCCAGGAGATGGTAATGGAAAGGCTAGCAAGTCATGGCCTTGAATGCTCCAGTTTCAGAGAAGCCTGGAAATATAAGGGTGAATTTGAGCTACATCAGGGAAATGCGGAGAGGCATTTCATGCAAGTGACAGCTGTTAAGGAAATCTCTACTGGGAAAAGAGACAATGAATTTAGTAATTCTGGGAGAAGCATACCCCTGAAATCAGTATTTTTAACACAACAGAAAGTTCCTACCATACAGCAAGTACATAAATTTGATATTTATGATAAACTCTTCCCCCAAAATTCAGTCATAATTGAATATAAAAGACTCCATGCTGAGAAGGAATCTTTGATAGGTAATGAATGTGAAGAATTCAACCAGAGTACGTACCTTAGTAAAGATATAGGAATTCCTCCTGGGGAGAAACCTTATGAAAGTCATGATTTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189164_MULTIEX1-2/4=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.147 C2=0.035
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(2.6=11.1)
A:
PF139001=GVQW=WD(100=84.6)
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACTGGAGCAAGGGAAGG
R:
CCTCTCCGCATTTCCCTGATG
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development