HsaEX0073903 @ hg19
Exon Skipping
Gene
ENSG00000240225 | ZNF542
Description
zinc finger protein 542 [Source:HGNC Symbol;Acc:25393]
Coordinates
chr19:56880235-56884652:+
Coord C1 exon
chr19:56880235-56880305
Coord A exon
chr19:56880648-56880706
Coord C2 exon
chr19:56884526-56884652
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGAATTCCTTTACAGCTC
3' ss Score
9.29
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
CTCTGCATTTCCAGGACCTGGTCACTATTCAGGACACGGTTCCAGCGCAGTGCGCGTTAGCCATGTCTCAG
Seq A exon
CTCCAGACTGAGAGGACGCAGCATAGAAAATGCTTATGAGTGGTTCAGACTCAGTAATG
Seq C2 exon
GGATGAGTGACATTCCAAGATGTGGCCATTGACTTCTCCAAGGAAGAGTGGGGATTCCTGAACCCTGCTCAGAGAGATTTGTACACAACTGTGATGCTGGAGAATTATCAGAACCTGGTCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240225_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCACTATTCAGGACACG
R:
TCTCTCTGAGCAGGGTTCAGG
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)