HsaEX0073920 @ hg19
Exon Skipping
Gene
ENSG00000172006 | ZNF554
Description
zinc finger protein 554 [Source:HGNC Symbol;Acc:26629]
Coordinates
chr19:2823038-2827741:+
Coord C1 exon
chr19:2823038-2823110
Coord A exon
chr19:2826248-2826344
Coord C2 exon
chr19:2827615-2827741
Length
97 bp
Sequences
Splice sites
3' ss Seq
AGTCTTGCTTTGTCACCCAGGCT
3' ss Score
4.41
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTCTGCCTGCCCAGGAACCTGCTTTTCCCAAGAGGAGAGAATGGCTGCTGGGTACCTGCCCCGCTGGTCCCAG
Seq A exon
GCTGGATTGCCGTGGCACAATCTCCGCTCACTGCAACCTCTGCCTCCCGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG
Seq C2 exon
GAATTAGTAACCTTTGAGGACGTGTCCATGGACTTCTCCCAGGAGGAGTGGGAGTTGCTGGAGCCTGCTCAGAAGAACCTGTACAGAGAGGTGATGCTGGAGAACTACAGGAACGTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172006_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.731 C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PU(9.1=8.0)
A:
PF139001=GVQW=PD(81.8=66.7)
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAACCTGCTTTTCCCAA
R:
ACCACGTTCCTGTAGTTCTCCA
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)