HsaEX0073922 @ hg19
Exon Skipping
Gene
ENSG00000172006 | ZNF554
Description
zinc finger protein 554 [Source:HGNC Symbol;Acc:26629]
Coordinates
chr19:2827615-2832492:+
Coord C1 exon
chr19:2827615-2827741
Coord A exon
chr19:2830338-2830473
Coord C2 exon
chr19:2832301-2832492
Length
136 bp
Sequences
Splice sites
3' ss Seq
TACATTGTAGCCTGTGTCAGTGC
3' ss Score
-1.06
5' ss Seq
CAAGTATCT
5' ss Score
1.57
Exon sequences
Seq C1 exon
GAATTAGTAACCTTTGAGGACGTGTCCATGGACTTCTCCCAGGAGGAGTGGGAGTTGCTGGAGCCTGCTCAGAAGAACCTGTACAGAGAGGTGATGCTGGAGAACTACAGGAACGTGGTCTCCCTGG
Seq A exon
TGCTTTGTTCATAGATGAAGAAGATTCCATCGTGTGTATACAACACGCTGTGTCCATCCATTCACCAGTTGATGGACGCCTGGGTTTCCACCTTTCCGCTGTTGTGAATCCTGTTGCTGTCAGCATTGGCAAACAA
Seq C2 exon
AAGCCTTGAAGAACCAATGTACTGATGTGGGGATTAAAGAGGGTCCACTTTCCCCAGCACAAACCTCACAAGTCACTAGTCTTTCCTCATGGACGGGGTATTTACTTTTTCAACCAGTGGCTTCTTCCCACTTGGAGCAAAGAGAAGCCCTGTGGATAGAGGAAAAAGGAACTCCTCAAGCCTCCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172006_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGGACTTCTCCCAGGA
R:
CACAGGGCTTCTCTTTGCTCC
Band lengths:
258-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)