HsaEX0073928 @ hg19
Exon Skipping
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:26422]
Coordinates
chr19:8935678-8942077:-
Coord C1 exon
chr19:8941994-8942077
Coord A exon
chr19:8941446-8941567
Coord C2 exon
chr19:8935678-8935784
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTCTTGAGACC
3' ss Score
0.82
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
ATGAGAAAAGCATCATTCAAGCTCAGATTCGTGTTGAAGCCTGCCACAAGGTCCACCTGTTGTTGTGGGTTTTTGGGTGACCAG
Seq A exon
ACCAAGTCTCACTCTGTTGGCCAGGTTGGAGTGCAGTGGCGCGATCTTGGCTCATGTCAACCTCCACCTCCCAGACTCAAGCAAATCTCCTGCCTCAGTTTCCTGAGTAGCTGGGACTACAG
Seq C2 exon
GGGTTACCCCCAGCAGTGTGTGAGAATGAAGAGTGTGGGCCACTGTGTCTCTGTTGACCTGCCAGATAGGAAATAGCGCCAGAGTTGCTGCAATCCACGTCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAAAGCATCATTCAAGCTCA
R:
GAGACGTGGATTGCAGCAACT
Band lengths:
186-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)