HsaEX0073929 @ hg19
Exon Skipping
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:28197]
Coordinates
chr19:9434448-9448693:+
Coord C1 exon
chr19:9434448-9434904
Coord A exon
chr19:9435371-9435456
Coord C2 exon
chr19:9448472-9448693
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGTGCCTTTTCTCTATAAGGAA
3' ss Score
8.22
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CATTTACAGGAGGTGAGCATGAAGTGGCCAATGGGAAAATTCTAGGAGGTATTGGGACTCATGAAGGTTCTGTTTCGGAGCCCTTGAGCTGCCGCTTGGCCAGTTCCCACACTGTGGAGTATGCTTTCGTTTTCAACAAATCCCAGCTCTTGTTCTTTTGTTGCTTCATTCTTTCTTTGCTTTGCTGGGCGTTTTGTCTAATTCTTTGTTCAAAACGCCAGTAACCTGGACAGCTTGCAGTCAAGACCCCCTACCGGTGACACTTGCGCTCTTCGGGGAGGTAAACAGCATTTCCTCTCAGCTCTGGGTTGGAAAAAGCCGCAGCAGCTGATGGGCCCGGGAACCCGAGGCCCCGCCCCCTAGGTGGTCCTAGCCTTTGCGCGTGCGCGGCGTGTCTGCGTGGGCGCATGCGCATAACGGCCGCCATCTTAACAGCGCGTTCCCGTTGGCGTCTGAG
Seq A exon
GAACAGCATCTCTGCCTTCCTGTTCACGGTGACCTTCGCTTGGTGTCCTCCTGGCCTCAGCAACCTGACAATTCTGTCGTGTCCCG
Seq C2 exon
AGAGATGGCTAATGAATGGCGCTTGATGACAGATGAGTAATGCCTGTTGCTGAAAGATTGACGGTATGAGGCAAGACTCCCACTACTACTTAATCAAGAGGAATTGAGATTGACTTACCCATAAGTTCAGACAGTGTCTCGAAGAGACTTTGGGAACAAGATATTCAGGCACATTTCACTGTTAGACTCACAGGATGCTGGCCATTGGTCTTTCCCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321-'0-4,'0-1,1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAAAAAGCCGCAGCAG
R:
TCAAGCGCCATTCATTAGCCA
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)