HsaEX0073954 @ hg19
Exon Skipping
Gene
ENSG00000189042 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:28696]
Coordinates
chr19:37177495-37203414:+
Coord C1 exon
chr19:37177495-37178588
Coord A exon
chr19:37180299-37180399
Coord C2 exon
chr19:37203288-37203414
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTTACTCCCTATAGGCA
3' ss Score
9.24
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TACAGTGTCACACACCCGACAGCCGACCACGGCCACCCAAAGGTCCCGCATCCGAGCAGGGACAGGAACACAATCACGCACCTGTCGCAGCCTCCTCGCCGCGCACACCGCCGCCTTGTCCTGGCATCAAACACACACGCACAGGTGCATACACAGGCCCGAGCTACGGCCCTGCACACCCTGTCTGCGTCCCGGGAGCTCGGGGCTTCCTCACCGTGAGCGCCGCCCTCATCCCAGCCACGCACTATGAGAATTTGGAAGGGGAACCAGAGATCAAAGTTCGAAAACCGCCCGGGCGCCTGTGGGAAATGTAGTCCAAGGCCGGAAACGCCCGGATGTGGAGAAGGCGCGCGTAGCCGGTGGACAGCAGGAACGCGCCGCGGAGACACCTGGGAGGCATCGTCCGCGTGGGAGTGCGCATGCGCAGACGCCCGGCCGGCAACCGAAGGTGAGGCTGGTGGGTCCCGCGGGCGCGGAGAAGGCGGGTGACGGTGTGACCC
Seq A exon
GCAGTCTTTAGCTCTCATGGATTGGGAGCTGGGAAAGGAATGAGAAGACAGAAGTCAGAGACAAGAAGAGGCTAACATGACTGATACCACTATAATTTAGT
Seq C2 exon
GGATCAGTGTCTTTCAATGATGTGACTGTGGACTTCACTCAGGAGGAGTGGCAGCACCTGGATCATGCTCAGAAGACTCTATATATGGATGTGATGTTGGAAAACTATTGCCACCTCATCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189042_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGTGGGAAATGTAGTCC
R:
CTCCTCCTGAGTGAAGTCCAC
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)