HsaEX0074043 @ hg38
Exon Skipping
Gene
ENSG00000176024 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:HGNC:25827]
Coordinates
chr19:51927147-51929824:+
Coord C1 exon
chr19:51927147-51927540
Coord A exon
chr19:51927895-51927994
Coord C2 exon
chr19:51929732-51929824
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGTCTCGCTCTGTCACACAGGCT
3' ss Score
5.74
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGACTTTTCTCCCCAGCCCGCTAAGGTGCACGTAGCCATACCATGTTTGTCTTGGCTAAGCTCGACCCTCTGAAAATAAATGAAACTTGGGCGCAGGATTTAGGTGCCAAAATATGGAGTTCTTCACCGTCCCGCGCTATCCCTGAATACTTGGGCAGAAAAGGTCCACTTTACCTTCCGTACGTGCAGGATTCAAAGATGGCTGCCTCCAGTATCCGTGACGAGAGGACGCGAACTTACTACCTCCCAGTCGTCCGTGCTCCGTACACCTGCAACTTCAGACCTTCCTCGGCCGCCGTAGGCCGGCTTGGAGGCTGGGGGAGGGCCCAGAAGTGGAATAATTCAGGAAAGTGCAGGTTCTGGGAAGTCTCGGTGGGTTCCCCGCAAAATCAG
Seq A exon
GCTTGAGTGCAGTGGCGCAATCGTGGCTCACTGCAGCCTCCATCTCCCGGGGCTCAGGTGATTTTCCCACCTCAGCTTTCCCGAGTAGCTGGGACTACAG
Seq C2 exon
AGATGGCATCTCACTATGTTGCCCAGGCTGATCTTGAACTCCTGACCTCAAGTGATCCTCTCTCCTTGGCCTCCTAAAGTGCTGGGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176024-'0-3,'0-1,1-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTTCCGTACGTGCAGGAT
R:
CAGCCTGGGCAACATAGTGAG
Band lengths:
252-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development