HsaEX0074046 @ hg19
Exon Skipping
Gene
ENSG00000142556 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:24722]
Coordinates
chr19:52516577-52521356:-
Coord C1 exon
chr19:52521261-52521356
Coord A exon
chr19:52520829-52520950
Coord C2 exon
chr19:52516577-52520612
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGACT
3' ss Score
11.22
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GGTATCAAACTAGCAAACCAGATGTACTCTCCAAGTTGGCACATGGACAAGAACCATGGACAACAGATGCTAAAATTCAGAATAAAAATTGTCCAG
Seq A exon
ACTGAGTCTCGCTCTATCACCCAGGCTGGAGTGCAATGGCCCAATCTCGGCTTGCTGCAACCTCGTCCTCCTGGGATCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAG
Seq C2 exon
GAATCGGGAAAGTTGACAGTCATCTGCAAGAGCACTCTCCAAACCAAAGACTTCTGAAGAGCGTGCAGCAATGCAATGGACAGAATACACTTAGAAATATTGTACATCTCAGCAAGACACATTTTCCTATAGTGCAAAATCATGATACATTTGACTTGTACAGAAAAAATTTGAAATCAAGTTTAAGTTTAATCAACCAGAAGAGAAGACATGGAATAAATAACCCTGTTGAGTTTATTGGAGGTGAGAAAACACTTCTACATGGTAAGCATGAACGTACGCATACTAAAACTAGATTTTCTGAAAATGCAAAATGTATCCATACTAAATTCCAAGTCTTCAAGCATCAGAGGACTCAGAAAATTGAGAAACCCCATGCATGCATTGAATGTGAGCAAACCTTCCTTAGGAAGTCTCAGCTCATTTACCATGAGAACATTTGTATACAAGAGAATCCTGGAAGTGGTCAATGTGAGAAATTATCCAGAAGTGTCCTGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142556_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=1.000 C2=0.129
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGACAACAGATGCTAA
R:
CCATGTCTTCTCTTCTGGTTGA
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)