HsaEX0074051 @ hg38
Exon Skipping
Gene
ENSG00000204611 | ZNF616
Description
zinc finger protein 616 [Source:HGNC Symbol;Acc:HGNC:28062]
Coordinates
chr19:52113091-52124049:-
Coord C1 exon
chr19:52123923-52124049
Coord A exon
chr19:52122360-52122457
Coord C2 exon
chr19:52113091-52117024
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTCTTGTTGCCCAGGCT
3' ss Score
6.85
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GGGCATTTGACATTCAAGGATGTAGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGAGCCTGTGCAGAAAGCTTTGTACAAGGATGTGATGTTGGAGAACTATAGGAACCTGGTCTTCCTAG
Seq A exon
GCTGGAGAATAATGGCGCGATCTCACCTCACTGCAACCTCCGTCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
GTATCTCTCCTAAATGTGTGATCAAGGAATTACCACCAACAGAGAACAGTAATACAGGAGAAAGGTTCCAAACAGTGGCACTGGAAAGACATCAAAGCTATGATATTGAAAATTTATACTTCAGGGAAATACAGAAACATCTACATGACCTTGAATTTCAATGGAAAGATGGTGAAACAAATGATAAAGAAGTGCCAGTGCCCCATGAAAACAATCTTACTGGTAAAAGAGATCAACATAGTCAAGGGGATGTAGAAAACAATCATATTGAAAACCAGCTTACATCAAACTTTGAGTCACGTCTGGCTGAACTGCAGAAAGTTCAAACTGAAGGGAGACTTTATGAATGTAATGAAACGGAGAAGACAGGTAATAATGGTTGTTTAGTTTCTCCACACATTAGGGAAAAAACGTATGTATGTAATGAATGTGGCAAAGCCTTTAAAGCGTCTTCCAGCCTTATTAATCATCAGAGGATACATACTACAGAGAAACCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204611_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.117
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF0009621=zf-C2H2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGGAGTGGAAATGCCT
R:
TGTCTTTCCAGTGCCACTGTT
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development