HsaEX0074076 @ hg19
Exon Skipping
Gene
ENSG00000197566 | ZNF624
Description
zinc finger protein 624 [Source:HGNC Symbol;Acc:29254]
Coordinates
chr17:16537944-16553060:-
Coord C1 exon
chr17:16552972-16553060
Coord A exon
chr17:16550643-16550708
Coord C2 exon
chr17:16537944-16538070
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTTATCCTGTATCCCATCAGAGC
3' ss Score
7.99
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTATGTCTTTGCAAGACTCCACTCTTTCCAGAGAGGGGAAACCAGAGGGAGAGATTATGGCTGCTGTGTTTTTCTCAGTTGGACGCCTG
Seq A exon
AGCCCTGAAGTTACCCAGCCAGATGAAGATCTTCACCTTCAGGCAGAAGAAACACAATTGGTAAAG
Seq C2 exon
GAATCGGTGACATTTAAGGATGTGGCTATAGACTTCACATTGGAGGAGTGGAGGTTGATGGACCCTACACAGAGGAACCTGCACAAGGATGTGATGCTAGAGAATTACAGGAATCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197566-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGACTCCACTCTTTCCA
R:
CCTTGTGCAGGTTCCTCTGTG
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)