HsaEX0074107 @ hg38
Exon Skipping
Gene
ENSG00000121864 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]
Coordinates
chr3:179322991-179327631:+
Coord C1 exon
chr3:179322991-179323291
Coord A exon
chr3:179325042-179325322
Coord C2 exon
chr3:179327561-179327631
Length
281 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTTTCTTTTTTAGACA
3' ss Score
12.07
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACCTCACCTCGTCACCTCCCCGCCCTCTCGGCGGGCCCCTGAGGTGCGCGGCGCAGGCGCGGAGCGTGGCGGCCAGGGCAGTGCGGCCGCGGAGCCTAGGCCAGGGGCCTGGCGCTCAGGGCGTGGGGCGCGCGGGGAGGGAGAGGGGTCGGCCCAGCACAGCGTCCGGGAGCGCTAGGGCCGGAGCAGCGCTGCCCGCCGCCGTGCGTCCGCGGGAAGGACCGCGCGGCCCCTCCGCCTGCGCTCTCGGCCGCCGCCGCCTCTGCGTGGGCCGGCCGGGAGGGCCTCGGGGGACTGACTG
Seq A exon
ACAGAGTTTCACTCCTGTTACCCAGGCTGGAGGACAATGATGTGATCTCGGGTCACCACAACCTCCGCCTCCCGGATTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTCAGATTACAGGCATGTGCCACCACGCCCGGCTAATTTTGTATTTTCAGTCGAGACGGGGTTTCCCCATGTTGGTCAGGCTAGTCTTGAATTCCCGACCTCAGGTGATCTGTTCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCGAG
Seq C2 exon
GCATTTTTTACTGTCTACAGAAACTTATTGTAATTCATTTTTCCTCACTCCAGTAGTAAGAATTATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121864_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTCCCCGCCCTCTC
R:
ACTACTGGAGTGAGGAAAAATGA
Band lengths:
347-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development