HsaEX0074125 @ hg19
Exon Skipping
Gene
ENSG00000198093 | ZNF649
Description
zinc finger protein 649 [Source:HGNC Symbol;Acc:25741]
Coordinates
chr19:52400105-52403547:-
Coord C1 exon
chr19:52403346-52403547
Coord A exon
chr19:52403051-52403165
Coord C2 exon
chr19:52400105-52400231
Length
115 bp
Sequences
Splice sites
3' ss Seq
CAAATACTTTGTTCACATAGTTC
3' ss Score
4.48
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTCCTGGCTCCCCAGAAGCAAGAGAGTTCAAATGAAGGAAGGAGGAGGTTCCTGGATGTGGATGTCATCATTTCTGGGAACACTCTTAAATGGAGACTCAGATTTCTTAGCCAAAATTTAGGGAGGATCCAGAAGAAACCAAAGACGAAGCATCCCAGTTCTTGGGTATTTCCTGAAACAGAAGAAAATGACAAAGGCCCAG
Seq A exon
TTCACATGTGACCAGTGTTGGAATATAATGTGCGACTCTGCCAGACCCTGTTGGCTACATTAAGTGTCAGCTTGTGTCCAAAATCTTTGGCCACCATCACACCCAGAGAATCATG
Seq C2 exon
GAATCACTGACCCTGGAGGATGTGGCTGTGGACTTCACCTGGGAGGAGTGGCAGTTCCTGAGCCCTGCTCAGAAGGACCTGTACCGGGATGTGATGTTGGAGAACTACAGCAACCTTGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198093_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTCCTGGATGTGGATG
R:
ATCCCGGTACAGGTCCTTCTG
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)