HsaEX0074150 @ hg19
Exon Skipping
Gene
ENSG00000198046 | ZNF667
Description
zinc finger protein 667 [Source:HGNC Symbol;Acc:28854]
Coordinates
chr19:56950694-56969616:-
Coord C1 exon
chr19:56969524-56969616
Coord A exon
chr19:56960926-56961026
Coord C2 exon
chr19:56950694-56954110
Length
101 bp
Sequences
Splice sites
3' ss Seq
AGTTTCTCTCTGTTCCCCAGGCT
3' ss Score
8.5
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCTTTCCTTTCGGAGACCAAATGTGATCACCTTATTGGAGAAAGGGAAAGCACCCTGGATGGTAGAGCCAGTAAGAAGACGCCGGGCTCCTG
Seq A exon
GCTGGACTACAATGATGGCATGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCGTGCCTCAGCCTCCCGAGCGGCTGGGATTACAG
Seq C2 exon
ACTCGGGGTCTAAATGTGAGACCAAGAAGTTACCTCCAAATCAATGCAACAAATCTGGGCAAAGCATCTGCCAGAAACTAGTTTCTGCACAACAAAAAGCTCCTACACGAAAGAGTGGCTGCAACAAAAATTCAGTCCTAGTAAAACCTAAGAAAGGGCATTCAGGGAAGAAACCTTTAAAATGTAATGACTGTGGTAAAACCTTTAGTCGAAGCTTCTCTCTTAAACTTCATCAGAACATTCATACAGGAGAGAAGCCTTTTGAATGCAGTAATTGTAGAAAAGCTTTCAGACAGATCTCATCCATCCTACTTCATCAGAGAATTCACAGTGGAAAGAAAAGCCATGAATGCAATAAATGTGGGGAAAGCTTCAATCAAAGAACAACCCTTATTCTACATATGAGAATTCATGATGGAAAGGAAATTCTTGACTGTGGGAAGGCCTTGAGTCAATGTCAGTCTTTCAATATACATCAGAAAATTCATGTTGTTGGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198046-'5-10,'5-7,6-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGACCAAATGTGATCACCT
R:
GGTTTCTTCCCTGAATGCCCT
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)