HsaEX0074151 @ hg19
Exon Skipping
Gene
ENSG00000198046 | ZNF667
Description
zinc finger protein 667 [Source:HGNC Symbol;Acc:28854]
Coordinates
chr19:56973707-56985493:-
Coord C1 exon
chr19:56985381-56985493
Coord A exon
chr19:56983068-56983556
Coord C2 exon
chr19:56973707-56973798
Length
489 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTCTTTCTTCCCCAGTAG
3' ss Score
8.77
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTTCCAGCCGTCCTCACCTCAGGAGGACATAGCTTTGTGCCTTTCAAAGCCCTTTCTCATCTATCATCAGGGACTCGGAAGACGAGCCAGGTTTACAGCCCTGCCTTGATGTG
Seq A exon
TAGTGCCGAGTTCCTTGAAGAAAATTATTTTATGGACAATGTATGAGTCTGTTTTCGTGCTGCTGATAAAGACATACCCAGACTCACAGTTCTACGTGGCTGGGGAGGCCTCACAATCGTGATGGAAGGTGAAAGACACGTCTTACATGGCCACAGGGAGAATGAGAGTCCCTGTACAGAACCATCAGATCACATGAGACTTACTCACTGCCATGAGAACAGCATGGGGGAAACCGCCCCCATGATTCAGTTATCTCCCACCGGGTCCCTCCCACAACACGTGGAAATTATGGGAGCTATAATTCAAGATGAGATTTGAGTGGGGACACAGCCAGACCATATCAGACAAGAATCATCTTCTCAAATTTGGGGTGCGTGGCTGAGTGCACACACCTGTGAAAACTGCGGGATGAATGCATTACAACTTCCTGGAACAAGTCATTTTACCTAAGTAATTGGAAGGGGAAAGCCAACTGATCTGCTTATCTG
Seq C2 exon
CCCTGCCTTACCAGCTCTCTGCCCATCTCTCAGTGTGGACCCTAAAGGGGGAGGAAAGGATGCCTTCTGCACGGGGGAAATCCAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198046_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.321
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCCGTCCTCACCTC
R:
GATTTGGATTTCCCCCGTGCA
Band lengths:
200-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)