HsaEX0074180 @ hg19
Exon Skipping
Gene
ENSG00000197124 | ZNF682
Description
zinc finger protein 682 [Source:HGNC Symbol;Acc:28857]
Coordinates
chr19:20135059-20150277:-
Coord C1 exon
chr19:20150152-20150277
Coord A exon
chr19:20141517-20141691
Coord C2 exon
chr19:20135059-20135185
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGGTTGGTTCCTAGATG
3' ss Score
8.21
5' ss Seq
GGAGTCAGT
5' ss Score
-2.51
Exon sequences
Seq C1 exon
TTCATTGCTTAGTATCCTCTGCTCTAGTAGTTCCCGGTGACTGTCGCAGCCTCTGTTGCCCTCTGACTTGCAGATGCTGTGAGATCCAGAGCTAAGACTCCACGACATCCCGGAAGCCGAAAAATG
Seq A exon
ATGGGAGTTGTTCCAGTTTTCACTTGGGTGAAAAAAAAGGAGAGCTGGAGACTGATCAACCAATTACTTTCATTTCATATGGCGATTAGAAAAACAGATGAGGCAATCATAATCTCTGCAATCCAGGAACTGTGTCTGTGGCAAATGAATAAATGGCTGAATTTCACACCATGGA
Seq C2 exon
GAACTGTTGACATTCAGGGATGTGACCATAGAATTCTCTCTGGAGGAGTGGGAGTTTCTGAACCCTGCTCAGCAGAGTTTGTATAGGAAAGTGATGCTAGAGAACTACAGAAACCTGGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197124_MULTIEX1-2/7=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCTCTGCTCTAGTAGTTCCCG
R:
CCAGAGAGACCAGGTTTCTGT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)