HsaEX0074182 @ hg19
Exon Skipping
Gene
ENSG00000197124 | ZNF682
Description
zinc finger protein 682 [Source:HGNC Symbol;Acc:28857]
Coordinates
chr19:20115227-20133908:-
Coord C1 exon
chr19:20133813-20133908
Coord A exon
chr19:20126583-20126651
Coord C2 exon
chr19:20115227-20118084
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTGCTTCTGCAGGCT
3' ss Score
10.91
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTCTTACTGTTTCTAAGCCAGAACTGATTAGCCGTCTGGAGCAAAGACAGGAGCCCTGGAATGTGAAGAGACATGAGACCATAGCCAAACCCCCAG
Seq A exon
GCTAGATTACAGCCTTACCATTTTGTGTAAAAAGAAGAGCAACATATTAATAAGTTTCCCTAGTATTAT
Seq C2 exon
CTATGTCTTCTCATTACACTGAAGACCTTTTGCCAGAACAGTGCATGCAAGATTCATTCCAAAAAGTGATACTGAGAAGATATGGAAGCTGTGGACTTGAGGATTTACACTTAAGGAAGGATGGGGAAAATGTGGGTGAGTGTAAGGATCAAAAAGAAATTTATAATGGACTTAACCAATGTTTGTCAACTCTACCTAGCAAAATTTTCCCATATAATAAATGTGTGAAAGTCTTTAGTAAATCATCAAATCTAAATAGAGAAAACATAAGACATACTACAGAGAAACTTTTCAAATGTATGCAATGTGGCAAAGTCTTTAAATCTCACTCAGGCCTTTCTTATCATAAGATAATTCACACTGAAGAGAAACTCTGCATATGTGAGGAATGTGGCAAAACCTTTAAGTGGTTCTCATACCTTACTAAACATAAGAGAATTCACACTGGAGAGAAACCATACAAATGTGAAGAATGTGGCAAAGCTTTTAACTGGTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197124_MULTIEX1-5/7=4-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=1.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.1)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATTAGCCGTCTGGAGCA
R:
TCCTCAAGTCCACAGCTTCCA
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)