HsaEX0074196 @ hg19
Exon Skipping
Gene
ENSG00000156853 | ZNF689
Description
zinc finger protein 689 [Source:HGNC Symbol;Acc:25173]
Coordinates
chr16:30613879-30620959:-
Coord C1 exon
chr16:30620846-30620959
Coord A exon
chr16:30617154-30617269
Coord C2 exon
chr16:30613879-30616768
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTTGAGATG
3' ss Score
4.64
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAACACCGATGACTGGGAACCGGCTGCTCTAGATCCGCAGGAGTACCCGAGAGGGCTAACAGTCCAGAGAA
Seq A exon
ATGGAATCTCGCTCTCTCGCCCAGGTTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCCGGGCGATTCTCCTGCCTCAGCCTTCTGGGTAGCTGGGATTACAG
Seq C2 exon
AAAGCAGAACCAGAAAGAAGAATGGGGAGAAGGAAGTATTCCCGCCTAAGGAGGCACCCCGAAAGGGGAAGCGAGGCCGGAGGCCCAGCAAACCCCGACTGATTCCTAGGCAGACGTCCGGGGGCCCCATCTGCCCTGACTGCGGCTGTACCTTCCCTGATCATCAGGCCCTGGAGAGCCACAAGTGCGCCCAGAATCTAAAAAAGCCTTACCCTTGCCCAGACTGTGGGCGCCGCTTTTCCTATCCATCCCTGCTGGTCAGTCACCGGCGGGCACACTCCGGCGAGTGCCCCTATGTTTGTGACCAGTGTGGCAAACGTTTCTCCCAGCGCAAGAACCTCTCCCAGCACCAGGTCATCCATACAGGGGAGAAGCCCTATCACTGCCCTGACTGTGGTCGCTGCTTCCGGAGGAGCCGGTCCTTGGCCAATCACCGGACCACACACACAGGTGAAAAACCCCACCAGTGCCCTAGCTGTGGACGTCGCTTCGCCTACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156853-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=5.3),PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAAACACCGATGACTGGG
R:
TCTCCAGGGCCTGATGATCAG
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)